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DrugReSC: Targeting Disease-critical Cell Subpopulations with Single-cell Transcriptomic Data for Drug Repurposing in Cancer
论文题目: DrugReSC: Targeting Disease-critical Cell Subpopulations with Single-cell Transcriptomic Data for Drug Repurposing in Cancer
作者: Chonghui Liu, Yan Zhang, Yingjian Liang, Tianjiao Zhang, Guohua Wang
联系作者: tianjiaozhang@nefu.edu.cn;ghwang@nefu.edu.cn
发表年度: 2024
DOI: DOI: 10.1093/bib/bbae490
摘要:

The field of computational drug repurposing aims to uncover novel therapeutic applications for existing drugs through high-throughput data analysis. However, there is a scarcity of drug repurposing methods leveraging the cellular-level information provided by single-cell RNA sequencing data. To address this need, we propose DrugReSC, an innovative approach to drug repurposing utilizing single-cell RNA sequencing data, intending to target specific cell subpopulations critical to disease pathology. DrugReSC constructs a drug-by-cell matrix representing the transcriptional relationships between individual cells and drugs and utilizes permutation-based methods to assess drug contributions to cellular phenotypic changes. We demonstrate DrugReSC's superior performance compared to existing drug repurposing methods based on bulk or single-cell RNA sequencing data across multiple cancer case studies. In summary, DrugReSC offers a novel perspective on the utilization of single-cell sequencing data in drug repurposing methods, contributing to the advancement of precision medicine for cancer.

刊物名称: Briefings in Bioinformatics
论文出处: https://academic.oup.com/bib/article/25/6/bbae490/7796621?login=true
影响因子: 6.8(2023IF)
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